ACPP
Anti-cancer peptide predictor
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Instruction
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User Instruction
Job title is optional, but advised to have one before submitting
(Default: Example)
Make sure your sequence does not contain any characters apart from standard single letter amino acid codes
FASTA formatted sequence only can be given in the input textarea.
(Sample format can be obtained by clicking the corresponding link over the sequence input box)
Use help link for providing mutation pattern.
If multiple sequence option is opted, only a maximum of
100 peptides
are allowed per job.
If protein scan is opted, the maximum length of the input protein should not exceed
2000
Results are self descriptive.When the treshold is set to 0.5, the SVM score close to 1 is considered as anticancer peptides, while close to 0 it is considered as non-anticancer peptides.
(Refer article for details)
Job ID will be generated on each job submission
, which will appear on screen following the submission.
Use
RETRIEVE
tab for retrieving the job result.
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Softwares used
WLSVM : Wrapper class for the libsvm, the original wrapper was developed by Yasser EL-Manzalawy.
Click here
WEKA: Weka is a collection of machine learning algorithms for data mining tasks. The algorithms can either be applied directly to a dataset or called from your own Java code. Weka contains tools for data pre-processing, classification, regression, clustering, association rules, and visualization. It is also well-suited for developing new machine learning schemes.
Click here
BLAST Stand-alone: BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit. The BLAST+ applications have a number of performance and feature improvements over the legacy BLAST applications.
Click here
Other Tools
SCLAP
APSLAP
DualPred
FuzzyAPP
Useful Links
SVM
AdaBoost
Anti cancer peptide database
Wise Words
"Great acts are made up of small deeds."
- Lao Tzu